STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL99765.1KEGG: sds:SDEG_0016 5.4e-10 amino acid permease K03294; Psort location: CytoplasmicMembrane, score: 10.00. (487 aa)    
Predicted Functional Partners:
EHM00105.1
KEGG: lci:LCK_01248 6.0e-190 sucrose phosphorylase K00690; Psort location: Cytoplasmic, score: 9.26.
    
  0.609
EHM00106.1
Alpha amylase, catalytic domain protein; KEGG: lbr:LVIS_0309 4.4e-151 trehalose-6-phosphate hydrolase; K01187 alpha-glucosidase; Psort location: Cytoplasmic, score: 9.26.
    
  0.609
EHL98475.1
Oligo-1,6-glucosidase; KEGG: lbr:LVIS_2180 1.8e-239 trehalose-6-phosphate hydrolase; K01187 alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.
    
  0.609
EHM00349.1
KEGG: lsl:LSL_0305 1.6e-75 argH; argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 9.97.
 
  
 
 0.502
EHM00350.1
KEGG: lfe:LAF_1624 1.3e-96 argininosuccinate lyase; K01755 argininosuccinate lyase; Psort location: Cytoplasmic, score: 9.97.
 
  
 
 0.498
EHL98065.1
NCS1 nucleoside transporter family protein; KEGG: xcb:XC_1663 0.0043 GumG protein; K13664 acyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.472
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.