STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (228 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
   
 0.927
EHL96079.1
KEGG: lbr:LVIS_0960 1.3e-89 pentose-5-phosphate-3-epimerase; K01783 ribulose-phosphate 3-epimerase; Psort location: Cytoplasmic, score: 9.97.
  
 0.926
EHM00478.1
Phosphopentomutase; KEGG: lsa:LSA0796 8.4e-35 deoB; phosphopentomutase K01839; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.916
EHM00079.1
Phosphopentomutase; KEGG: lcb:LCABL_25260 1.1e-92 deoB; phosphopentomutase K01839; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.916
EHL98518.1
Putative phosphoglucomutase; KEGG: lbr:LVIS_1907 3.1e-205 phosphomannomutase; K01835 phosphoglucomutase; Psort location: Cytoplasmic, score: 9.97.
     
 0.884
EHM01634.1
Orotidine 5'-phosphate decarboxylase/HUMPS family protein; KEGG: lbr:LVIS_0442 1.0e-64 3-hexulose-6-phosphate synthase related protein; K08093 3-hexulose-6-phosphate synthase; Psort location: Cytoplasmic, score: 8.96.
    
 0.882
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.880
prs-2
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.872
EHL98471.1
KEGG: lbr:LVIS_0144 3.6e-108 6-phosphogluconate dehydrogenase-like protein; K00033 6-phosphogluconate dehydrogenase; Psort location: Cytoplasmic, score: 9.26.
    
 0.871
EHL98570.1
KEGG: lpl:lp_1541 1.3e-176 gnd2; 6-phosphogluconate dehydrogenase K00033; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.865
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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