STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98931.1PAP2 family protein; KEGG: lsl:LSL_1484 2.3e-19 pgpB; phosphatidylglycerophosphatase B K01096; Psort location: CytoplasmicMembrane, score: 10.00. (219 aa)    
Predicted Functional Partners:
EHM00088.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: lca:LSEI_1733 9.3e-110 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.853
EHL98932.1
Bacterial membrane protein YfhO; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
menE
O-succinylbenzoate-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
    
 0.684
EHL98933.1
Hypothetical protein; KEGG: naz:Aazo_5355 0.0024 cytochrome c oxidase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.675
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.611
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.563
EHL98930.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: lca:LSEI_2680 2.2e-69 signal transduction histidine kinase; K00936; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.538
EHL95952.1
Putative undecaprenol kinase; KEGG: lbr:LVIS_0750 2.4e-31 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.491
EHL95605.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.474
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
    
 0.409
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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