STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98950.1KEGG: sds:SDEG_0144 5.8e-14 membrane-bound protease CAAX family K07052; Psort location: CytoplasmicMembrane, score: 10.00. (232 aa)    
Predicted Functional Partners:
EHL98951.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.762
EHM00437.1
Glycosyl hydrolase family 25; KEGG: lpl:lp_3093 2.5e-32 muramidase (putative) K01185.
    
   0.595
EHM00099.1
KEGG: sds:SDEG_0144 1.7e-11 membrane-bound protease CAAX family K07052; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.526
EHL98952.1
DNA-binding helix-turn-helix protein; KEGG: mla:Mlab_1603 0.00060 adenine deaminase K01486; Psort location: CytoplasmicMembrane, score: 10.00.
       0.521
EHL98949.1
GroES-like protein; KEGG: lbr:LVIS_0869 8.2e-150 threonine dehydrogenase related Zn-dependent dehydrogenase; K00001 alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
 
     0.461
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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