STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98748.1Addiction module antitoxin, RelB/DinJ family; KEGG: lsp:Bsph_3610 0.0055 shikimate kinase K00891. (98 aa)    
Predicted Functional Partners:
EHL98749.1
Hypothetical protein.
 
     0.946
EHL99851.1
Terminase small subunit; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.813
EHL97156.1
Replication initiator protein A.
 
    0.541
EHL97288.1
Replication initiator protein A.
 
     0.486
EHL98747.1
Transporter, major facilitator family protein; KEGG: hse:Hsero_0990 2.7e-41 mmr; methylenomycin A resistance protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.455
EHL97364.1
Hypothetical protein; KEGG: har:HEAR3415 0.0063 soj; chromosome partitioning protein K03496; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.447
EHM01548.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: lbi:LEPBI_II0025 1.9e-22 putative ATPase, ParA family K03496; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.442
EHL98484.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.432
EHL97051.1
Toxin-antitoxin system, toxin component, RelE family.
  
     0.426
EHL97907.1
Hypothetical protein; KEGG: tcu:Tcur_3468 0.00086 DNA primase catalytic core domain protein; K02316 DNA primase.
 
     0.414
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.