STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98624.123S rRNA (uracil-5-)-methyltransferase RumA; KEGG: lbr:LVIS_2103 7.0e-144 tRNA (uracil-5-)-methyltransferase related enzyme; K00599; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (472 aa)    
Predicted Functional Partners:
EHL98625.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.690
EHL95899.1
NOL1/NOP2/sun family protein; KEGG: lbr:LVIS_0862 1.7e-133 tRNA and rRNA cytosine-C5-methylase; K00599; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.526
EHL98623.1
Pro-kumamolisin, activation domain protein; KEGG: bac:BamMC406_3792 1.7e-23 pseudomonalisin; Psort location: Extracellular, score: 9.72.
       0.444
EHL96075.1
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.416
pheT
KEGG: lbr:LVIS_1009 3.3e-265 pheT; phenylalanyl-tRNA synthetase subunit beta K01890; Psort location: Cytoplasmic, score: 9.97.
 
    0.415
EHM01637.1
Carbonate dehydratase, eukaryotic-type; KEGG: lcz:LCAZH_0573 6.3e-40 carbonic anhydrase; K01674 carbonic anhydrase; Psort location: CytoplasmicMembrane, score: 9.82.
   
    0.414
EHL95922.1
Putative ribosomal protein S1; KEGG: hor:Hore_10450 4.6e-85 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Psort location: Cytoplasmic, score: 9.97.
   
    0.403
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.402
EHL97845.1
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
  
 0.400
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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