STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98565.1Hypothetical protein; KEGG: rba:RB763 1.0e-06 iduronate-2-sulfatase K01136. (276 aa)    
Predicted Functional Partners:
EHM00451.1
Hypothetical protein.
  
     0.775
EHM00452.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.775
EHM00448.1
Hypothetical protein; KEGG: eci:UTI89_C4210 3.2e-10 yicJ; putative transporter K03292; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.753
EHM00449.1
Hypothetical protein.
 
     0.744
EHL98535.1
Fibro-slime domain protein; KEGG: sce:YIR019C 1.4e-14 MUC1, FLO11, STA4; GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p); K01178 glucoamylase.
  
     0.698
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.646
EHL99752.1
Putative 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase; KEGG: lbr:LVIS_0330 1.7e-103 3-oxoacyl-acyl carrier protein reductase; K00038 3alpha(or 20beta)-hydroxysteroid dehydrogenase; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.645
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.642
EHL96183.1
Helicase protein; KEGG: pic:PICST_88383 2.8e-30 ADD1.2; ATP-dependent DNA helicase K01152; Psort location: Cytoplasmic, score: 8.96.
    
   0.641
EHM00791.1
Putative diacetyl reductase ((R)-acetoin forming); KEGG: llm:llmg_0339 1.1e-92 dar; acetoin(diacetyl)reductase K03366; Psort location: Cytoplasmic, score: 9.26; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.589
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.