STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98363.1Transcriptional regulator, ArsR family; Psort location: Cytoplasmic, score: 8.96. (98 aa)    
Predicted Functional Partners:
EHL98364.1
Drug resistance MFS transporter, drug:H+ antiporter-2 family; KEGG: hse:Hsero_0990 1.6e-52 mmr; methylenomycin A resistance protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the major facilitator superfamily.
 
     0.679
EHL98361.1
Peptidase family S51; KEGG: lpl:lp_1574 3.2e-45 hypothetical protein; K05995 dipeptidase E; Belongs to the peptidase S51 family.
 
     0.529
EHL98362.1
Isochorismatase family protein; KEGG: lca:LSEI_2755 1.4e-51 amidase; K05993 isochorismatase; Psort location: Cytoplasmic, score: 8.96.
       0.512
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.428
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.