STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98326.1KEGG: lbr:LVIS_0864 1.2e-123 succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase; Psort location: Cytoplasmic, score: 9.97. (384 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.883
EHL95337.1
Putative succinylornithine transaminase; KEGG: lfe:LAF_0723 3.7e-122 argD; acetylornithine aminotransferase; K00818 acetylornithine aminotransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.860
EHL99052.1
KEGG: lpl:lp_1321 2.2e-149 pepV; dipeptidase PepV K01274; Psort location: Cytoplasmic, score: 8.96.
  
  
 
0.857
EHL98695.1
Amidohydrolase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
    
  0.849
EHL99022.1
Glutamate-cysteine ligase; KEGG: lbr:LVIS_1590 1.5e-143 gamma-glutamylcysteine synthetase; K01919 glutamate--cysteine ligase; Psort location: Cytoplasmic, score: 9.26.
     
 0.837
EHL98325.1
Hypothetical protein; KEGG: lsl:LSL_1721 5.3e-20 acyl-CoA hydrolase K01073; Psort location: Cytoplasmic, score: 8.96.
  
    0.608
EHL98327.1
KEGG: apb:SAR116_0757 0.0021 universal stress protein family protein.
  
    0.585
argG
KEGG: lpj:JDM1_0642 8.6e-155 argG; argininosuccinate synthase; K01940 argininosuccinate synthase; Psort location: Cytoplasmic, score: 9.26; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.545
phnX-2
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
  0.540
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 0.505
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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