STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98333.1Methyltransferase domain protein; KEGG: ckl:CKL_2616 1.6e-66 methyltransferase. (243 aa)    
Predicted Functional Partners:
EHL98330.1
YibE/F-like protein; Psort location: CytoplasmicMembrane, score: 10.00; overlaps another CDS with the same product name.
       0.678
EHL98331.1
YibE/F-like protein; KEGG: bac:BamMC406_4722 0.0091 monosaccharide-transporting ATPase K10820; Psort location: CytoplasmicMembrane, score: 10.00; overlaps another CDS with the same product name.
       0.678
EHL98332.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.678
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
 0.609
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.540
EHL95884.1
FAD dependent oxidoreductase; KEGG: lpl:lp_1776 8.7e-91 oxidoreductase K00540; Psort location: CytoplasmicMembrane, score: 9.82.
    
 0.518
EHL95275.1
KEGG: lbr:LVIS_0719 4.5e-165 cyclopropane fatty acid synthase-like protein; K00574 cyclopropane-fatty-acyl-phospholipid synthase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.511
EHL99244.1
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  0.503
phnX-2
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
 
  0.476
EHL99308.1
Cyclic nucleotide-binding domain protein; KEGG: bde:BDP_1802 2.8e-14 transcription regulator, crp family; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.468
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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