STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98074.1YycH protein. (177 aa)    
Predicted Functional Partners:
EHL98073.1
Hypothetical protein.
     0.994
EHL98075.1
YycH protein; Psort location: OuterMembrane, score: 9.49.
 
  
 0.972
EHL98072.1
Metallo-beta-lactamase domain protein; KEGG: snc:HMPREF0837_11277 9.8e-83 phnP; beta-lactamase superfamily I metal-dependent hydrolase; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.871
EHL98076.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: lbr:LVIS_0030 2.9e-147 signal transduction histidine kinase; K07652 two-component system, OmpR family, sensor histidine kinase VicK; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 0.758
EHL98077.1
Hypothetical protein; KEGG: lbr:LVIS_0030 1.5e-72 signal transduction histidine kinase; K07652 two-component system, OmpR family, sensor histidine kinase VicK.
 
  
 0.752
EHL98071.1
Serine protease do-like HtrA; KEGG: lbr:LVIS_0034 4.4e-135 trypsin-like serine protease; K01362.
  
    0.665
EHL95432.1
Hypothetical protein.
  
     0.656
EHM00489.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.649
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
   
 0.642
EHM01464.1
Bacterial ABC transporter protein EcsB; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.614
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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