STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL98008.1ABC transporter, solute-binding protein; KEGG: apb:SAR116_0970 0.00030 periplasmic sorbitol-binding protein, putative K10227; Psort location: Periplasmic, score: 9.99. (455 aa)    
Predicted Functional Partners:
EHL98005.1
KEGG: lpl:lp_1324 4.9e-104 sugar ABC transporter, ATP-binding protein (putative); K05816 sn-glycerol 3-phosphate transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.999
EHL98006.1
KEGG: scl:sce9265 3.4e-32 ABC transporter permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EHL98007.1
ABC transporter, permease protein; KEGG: tex:Teth514_2199 6.4e-47 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.844
EHL98009.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: ooe:OEOE_1460 1.4e-67 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.733
thiM
Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.
     
 0.643
EHM00410.1
ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.8e-58 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 7.88.
    
 0.517
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.433
dnaX
DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
  0.418
EHL96652.1
KEGG: lbr:LVIS_0606 9.4e-78 DNA polymerase III subunit delta' K02341; Psort location: Cytoplasmic, score: 9.26.
    
  0.418
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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