STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL97905.1Hypothetical protein; KEGG: lpl:pWCFS103_22 8.3e-27 traI; DNA topoisomerase; K03169 DNA topoisomerase III. (63 aa)    
Predicted Functional Partners:
EHL97945.1
Toprim domain protein; KEGG: lpl:pWCFS103_22 6.7e-123 traI; DNA topoisomerase; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.26.
 
     0.972
EHL97907.1
Hypothetical protein; KEGG: tcu:Tcur_3468 0.00086 DNA primase catalytic core domain protein; K02316 DNA primase.
 
     0.870
EHM00148.1
KEGG: ppe:PEPE_0562 6.7e-226 ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
   
 0.832
EHL95925.1
KEGG: lre:Lreu_0760 1.5e-104 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
   
 0.832
EHL99763.1
Putative glutamate synthase [NADPH], large subunit; KEGG: lca:LSEI_2556 0. glutamate synthase domain-containing 3; K00265 glutamate synthase (NADPH/NADH) large chain; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.671
leuS
leucine--tRNA ligase; KEGG: lbr:LVIS_1062 0. leuS; leucyl-tRNA synthetase K01869; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.641
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.634
EHL99220.1
KEGG: lpj:JDM1_0939 6.2e-271 pcrA; ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.629
EHL97552.1
Single-strand binding family protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.620
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.591
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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