STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL97876.1Glycosyl hydrolase family 3 protein; KEGG: lrh:LGG_00685 4.9e-159 bglX; beta-glucosidase (GH3); K05349 beta-glucosidase; Psort location: Periplasmic, score: 9.44; overlaps another CDS with the same product name. (567 aa)    
Predicted Functional Partners:
EHL97875.1
Glycosyl hydrolase family 3 protein; KEGG: lcb:LCABL_07640 1.1e-83 bglB; thermostable beta-glucosidase B (gentiobiase) (cellobiase) (beta-D-glucoside glucohydrolase) K05349; Psort location: Periplasmic, score: 9.44; overlaps another CDS with the same product name.
     0.994
EHM00106.1
Alpha amylase, catalytic domain protein; KEGG: lbr:LVIS_0309 4.4e-151 trehalose-6-phosphate hydrolase; K01187 alpha-glucosidase; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.857
EHL98475.1
Oligo-1,6-glucosidase; KEGG: lbr:LVIS_2180 1.8e-239 trehalose-6-phosphate hydrolase; K01187 alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.857
EHL97877.1
Transporter, major facilitator family protein; KEGG: hse:Hsero_0990 4.9e-08 mmr; methylenomycin A resistance protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.745
EHL95670.1
Hypothetical protein.
  
 
 0.553
EHL95671.1
Beta-lactamase.
  
 
 0.553
EHL96161.1
Glycosyl hydrolase family 20, catalytic domain protein; KEGG: asu:Asuc_0859 1.8e-49 glycoside hydrolase family protein; K12373 beta-hexosaminidase; Psort location: Periplasmic, score: 9.44.
    
 0.502
EHM00081.1
NlpC/P60 family protein.
    
 0.482
EHM00515.1
Beta-lactamase; KEGG: lcb:LCABL_23180 3.1e-38 pbpX1; serine-type D-Ala-D-Ala carboxypeptidase; Psort location: CytoplasmicMembrane, score: 9.97.
 
 
 0.464
EHL97874.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.439
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.