STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL97837.1Putative ATP synthase F0, A subunit; KEGG: sbn:Sbal195_0924 0.0033 spermidine synthase K00797; Psort location: CytoplasmicMembrane, score: 10.00. (522 aa)    
Predicted Functional Partners:
EHL97838.1
S4 domain protein; KEGG: hiq:CGSHiGG_06085 8.4e-06 glucose-6-phosphate 1-dehydrogenase K04762.
  
    0.895
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.842
pth
aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.804
EHL99555.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.641
EHL97839.1
Septum formation initiator.
       0.636
minC
Putative septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
    0.568
EHL95616.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
    0.547
EHM00634.1
Hypothetical protein; KEGG: par:Psyc_1270 0.0075 algW; serine protease; K04691 serine protease DegS; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.543
EHL97840.1
KEGG: lsg:lse_0204 4.5e-30 RNA-binding protein K07571; Psort location: Cytoplasmic, score: 9.97.
 
     0.539
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
     0.534
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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