STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL97600.1PAP2 family protein; KEGG: cgl:NCgl1145 4.2e-82 cgl1192; serine protease K01362. (512 aa)    
Predicted Functional Partners:
EHM00088.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: lca:LSEI_1733 9.3e-110 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.853
menE
O-succinylbenzoate-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
    
 0.684
EHL98511.1
Hypothetical protein.
  
     0.663
EHL95353.1
Hypothetical protein; KEGG: ddi:DDB_G0271052 0.0076 CHR group protein; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4; Psort location: Extracellular, score: 9.64.
  
     0.647
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.611
EHL99328.1
Ser/Thr phosphatase family protein; KEGG: lpl:lp_3251 3.4e-57 3',5'-cyclic-nucleotide phosphodiesterase K01120; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.610
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.563
EHL97149.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.532
EHL97601.1
Hypothetical protein.
       0.528
EHM00102.1
Hypothetical protein; KEGG: cfa:482756 0.0095 similar to Maltase-glucoamylase, intestinal; K01178 glucoamylase K01187; Psort location: Extracellular, score: 9.64.
  
     0.519
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.