STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL97539.1KEGG: lrl:pLC705_00036 1.6e-231 hsdM1; type I restriction modification system protein HsdMI, M subunit; K03427 type I restriction enzyme M protein. (441 aa)    
Predicted Functional Partners:
EHL97537.1
Hypothetical protein; KEGG: amt:Amet_1608 8.0e-17 restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit.
 
 
 0.995
EHL97383.1
KEGG: lsl:LSL_0916 8.5e-45 hsdS; type I restriction-modification system specificity subunit; K01154 type I restriction enzyme, S subunit.
 
 0.979
EHL97538.1
Hypothetical protein; KEGG: amt:Amet_1608 2.5e-38 restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit.
  
 
 0.972
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.572
EHL97375.1
Hypothetical protein.
  
  
 0.461
EHL95875.1
Fibronectin-binding domain protein.
  
    0.442
EHL97536.1
Hypothetical protein.
       0.405
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.