STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL96864.1KEGG: ppe:PEPE_1819 3.1e-47 riboflavin synthase subunit alpha K00793; Psort location: Cytoplasmic, score: 9.26. (202 aa)    
Predicted Functional Partners:
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 0.999
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
 0.999
EHL96865.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
 0.999
EHL95981.1
Riboflavin biosynthesis protein RibF; KEGG: lbr:LVIS_1332 6.3e-88 FAD synthase; K11753 riboflavin kinase / FMN adenylyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribF family.
  
 
 0.962
EHM00566.1
Riboflavin kinase; KEGG: lpl:lp_0850 6.7e-52 ribC1; bifunctional protein: riboflavin kinase; FMN adenylyltransferase K11753; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribF family.
  
 
 0.915
EHL95900.1
Cof-like hydrolase; KEGG: lcb:LCABL_28120 4.8e-42 folE; GTP cyclohydrolase I K07024; Psort location: Cytoplasmic, score: 8.96.
     
 0.915
EHL95934.1
Pyruvate kinase; KEGG: lbr:LVIS_0765 7.0e-263 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 9.97.
    
  0.849
EHM00165.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: btk:BT9727_0684 7.1e-112 ndh; NADH dehydrogenase K00356; Psort location: Cytoplasmic, score: 9.97.
   
    0.723
EHL98912.1
CoA-disulfide reductase family protein; KEGG: efa:EF2989 1.5e-159 coenzyme A disulfide reductase; K00359 NADH oxidase; Psort location: Cytoplasmic, score: 9.97.
   
    0.723
rpmE2
Ribosomal protein L31; KEGG: apb:SAR116_2278 8.4e-06 ribosomal protein L31 K02909.
   
    0.708
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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