STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL96296.1Phage major capsid protein, HK97 family; KEGG: bao:BAMF_3086 3.4e-14 seryl-tRNA synthetase seryl-tRNA(Ser/sec) synthetase; serine-tRNA ligase; SerRS. (413 aa)    
Predicted Functional Partners:
EHL96294.1
Phage portal protein, HK97 family; Psort location: Extracellular, score: 9.64.
 
 
 
 0.990
EHL96295.1
KEGG: lsl:LSL_0284 1.1e-49 clpP; ATP-dependent Clp protease proteolytic subunit K01358; Belongs to the peptidase S14 family.
 
    0.962
EHL96291.1
Phage terminase, small subunit, P27 family.
 
   
 0.913
EHL96292.1
Putative phage terminase, large subunit.
 
     0.912
EHL96299.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.907
EHL96301.1
Phage major tail protein; KEGG: lbr:LVIS_0144 0.00062 6-phosphogluconate dehydrogenase-like protein; K00033 6-phosphogluconate dehydrogenase.
 
     0.907
EHL96298.1
Putative phage head-tail adaptor.
 
     0.889
EHL96304.1
Phage tail tape measure protein, TP901 family; KEGG: edi:EDI_048910 1.8e-13 intracellular protein transport protein USO1; Psort location: OuterMembrane, score: 9.49.
 
     0.853
EHL96307.1
Phage minor structural protein.
 
    0.812
EHL96594.1
Hypothetical protein; KEGG: ddi:DDB_G0271052 1.3e-09 CHR group protein; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4.
   
   0.796
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.