STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL96117.1KEGG: bmq:BMQ_3150 0.0029 sortase family protein K07284. (216 aa)    
Predicted Functional Partners:
EHL96116.1
Transporter, major facilitator family protein; KEGG: hse:Hsero_0990 2.5e-38 mmr; methylenomycin A resistance protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.509
EHL97150.1
single-stranded-DNA-specific exonuclease RecJ; KEGG: lbr:LVIS_1377 5.6e-190 single-stranded DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 9.26.
     
 0.440
EHM01476.1
Hypothetical protein; KEGG: lbr:LVIS_1489 2.1e-26 membrane carboxypeptidase (penicillin-binding protein); K12555 penicillin-binding protein 2A.
  
   
 0.424
EHL96458.1
Hypothetical protein; KEGG: chu:CHU_3727 0.00031 b-glycosidase, CBM9 module, glycoside hydrolase family 8 protein K01238; Psort location: Extracellular, score: 9.64.
    
 0.403
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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