STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL96126.1KxYKxGKxW signal domain protein; KEGG: spo:SPAPB1E7.04c 1.5e-38 chitinase (predicted). (1846 aa)    
Predicted Functional Partners:
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.862
EHM00081.1
NlpC/P60 family protein.
  
 
 0.860
EHL95604.1
Competence/damage-inducible protein CinA domain protein; Belongs to the CinA family.
    
  0.859
EHM00086.1
GDSL-like protein; KEGG: coc:Coch_1034 0.0078 sialate O-acetylesterase K05970.
   
 0.687
EHL96941.1
50S ribosomal protein L22 domain protein.
   
 0.687
EHL96942.1
Hypothetical protein; KEGG: lbr:LVIS_1825 0.00011 D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
   
 0.687
EHL95911.1
GDSL-like protein; KEGG: bmq:BMQ_4053 7.2e-23 GDSL-like lipase/acylhydrolase; Psort location: Extracellular, score: 9.64.
   
 0.687
EHL96127.1
Hypothetical protein; KEGG: spo:SPAPB1E7.04c 1.3e-43 chitinase (predicted); Psort location: Extracellular, score: 9.46.
       0.615
EHM01628.1
Hypothetical protein; KEGG: lbr:LVIS_1825 1.4e-06 D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: Extracellular, score: 9.65.
  
    0.525
EHL96125.1
Hypothetical protein; KEGG: bxe:Bxe_A2361 5.0e-10 DNA-directed DNA polymerase K02343; Psort location: Extracellular, score: 9.65.
       0.495
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.