STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95882.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82. (131 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
     0.797
fhs
KEGG: lbr:LVIS_0834 8.0e-191 formate--tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase; Psort location: Cytoplasmic, score: 8.96.
       0.762
EHL99643.1
Hypothetical protein.
  
     0.753
EHL99644.1
dUTP diphosphatase; Psort location: Cytoplasmic, score: 8.96.
  
     0.752
EHL95879.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.743
EHL99731.1
DNA-binding helix-turn-helix protein.
  
     0.720
EHL95926.1
KEGG: bce:BC1484 0.0019 hypothetical protein K01529; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.719
EHL95973.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.716
EHL95883.1
Ribonuclease HI; KEGG: lsl:LSL_0840 9.4e-30 ribonuclease HI / cell wall enzyme EBSB K03469.
 
   
 0.713
EHL99642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.699
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.