STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (344 aa)    
Predicted Functional Partners:
EHL95896.1
Diphosphomevalonate decarboxylase; KEGG: lbr:LVIS_0859 2.5e-93 phosphomevalonate kinase; K01597 diphosphomevalonate decarboxylase.
 
  
 0.996
EHL95897.1
Phosphomevalonate kinase; KEGG: lsa:LSA0906 6.5e-125 mvaK2; phosphomevalonate kinase K00938; Psort location: Cytoplasmic, score: 8.96.
 
 0.995
EHL95895.1
Mevalonate kinase; KEGG: lbr:LVIS_0858 1.1e-58 mevalonate kinase; K00869 mevalonate kinase.
 
  
 0.978
phnX-2
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
 0.928
EHL96065.1
Putative geranyltranstransferase; KEGG: lre:Lreu_1181 5.5e-73 farnesyl-diphosphate synthase K13789; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
  
 
 0.924
EHL95934.1
Pyruvate kinase; KEGG: lbr:LVIS_0765 7.0e-263 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 9.97.
  
 0.898
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.894
EHL95792.1
KEGG: lbr:LVIS_1363 2.5e-109 3-hydroxy-3-methylglutaryl CoA synthase; K01641 hydroxymethylglutaryl-CoA synthase; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.880
EHM00417.1
KEGG: lfe:LAF_0030 8.6e-52 D-lactate dehydrogenase; K03778 D-lactate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.876
EHM00938.1
hydroxymethylglutaryl-CoA reductase, degradative; KEGG: lbr:LVIS_0450 7.7e-99 hydroxymethylglutaryl-CoA reductase; K00021 3-hydroxy-3-methylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 0.841
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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