STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95926.1KEGG: bce:BC1484 0.0019 hypothetical protein K01529; Psort location: CytoplasmicMembrane, score: 9.82. (359 aa)    
Predicted Functional Partners:
EHL95925.1
KEGG: lre:Lreu_0760 1.5e-104 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.971
EHL95924.1
LysM domain protein; KEGG: ooe:OEOE_1199 6.6e-09 LysM repeat-containing muramidase; K01185 lysozyme; Psort location: Extracellular, score: 9.64.
 
     0.879
EHM00148.1
KEGG: ppe:PEPE_0562 6.7e-226 ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.845
EHL95931.1
Hypothetical protein; KEGG: bmq:BMQ_4380 3.4e-09 ribT; acetyltransferase K02859.
 
     0.823
EHL95918.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_01109810 2.8e-09 Tubulin-tyrosine ligase family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.777
EHL95893.1
Hypothetical protein.
  
     0.749
EHL95882.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.719
EHL95927.1
Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
     0.708
EHL99628.1
Bacterial membrane protein YfhO; Psort location: CytoplasmicMembrane, score: 9.73.
  
     0.670
EHL95922.1
Putative ribosomal protein S1; KEGG: hor:Hore_10450 4.6e-85 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Psort location: Cytoplasmic, score: 9.97.
 
     0.656
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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