STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95927.1Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. (212 aa)    
Predicted Functional Partners:
EHL95926.1
KEGG: bce:BC1484 0.0019 hypothetical protein K01529; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.708
EHL95924.1
LysM domain protein; KEGG: ooe:OEOE_1199 6.6e-09 LysM repeat-containing muramidase; K01185 lysozyme; Psort location: Extracellular, score: 9.64.
 
     0.651
EHL95931.1
Hypothetical protein; KEGG: bmq:BMQ_4380 3.4e-09 ribT; acetyltransferase K02859.
 
     0.628
EHL95928.1
Pseudouridine synthase B, ribosomal large subunit; KEGG: lpl:lp_1888 4.9e-81 rluB; pseudouridylate synthase K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
       0.615
EHL95929.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.613
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.612
EHL95933.1
Putative conserved virulence factor B; Psort location: Cytoplasmic, score: 8.96; Belongs to the CvfB family.
 
     0.607
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.528
EHL99215.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.520
EHL95925.1
KEGG: lre:Lreu_0760 1.5e-104 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
       0.514
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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