STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95787.1Methyltransferase small domain protein; KEGG: lsl:LSL_0509 3.3e-66 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96. (259 aa)    
Predicted Functional Partners:
EHL95786.1
GIY-YIG catalytic domain protein; KEGG: sjp:SJA_C1-21810 6.1e-10 trmH; tRNA/rRNA methyltransferase; K02533 tRNA/rRNA methyltransferase.
  
  
 0.903
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.874
EHL95788.1
Acyltransferase; KEGG: lsl:LSL_0508 8.2e-79 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655.
       0.692
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
     0.675
EHL95785.1
D-lactate dehydrogenase; KEGG: lbr:LVIS_1352 9.4e-133 lactate dehydrogenase related 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.580
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
 
     0.505
EHM00174.1
Pyruvate, phosphate dikinase; KEGG: lcz:LCAZH_2308 0. phosphoenolpyruvate synthase/pyruvate phosphate dikinase; K01006 pyruvate,orthophosphate dikinase; Psort location: Cytoplasmic, score: 9.97; Belongs to the PEP-utilizing enzyme family.
    
  0.500
EHL98081.1
DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
     0.497
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
   
 0.473
rimP
Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
     0.460
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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