STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95789.1Hypothetical protein; KEGG: lki:LKI_01225 6.5e-15 LexA repressor K09976; Psort location: CytoplasmicMembrane, score: 9.82. (74 aa)    
Predicted Functional Partners:
EHL95790.1
Hypothetical protein; KEGG: edi:EDI_239030 0.0019 cylicin-1; Psort location: Cytoplasmic, score: 8.96.
 
    0.781
recU
Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
  
     0.757
EHL98884.1
Putative regulatory protein spx; KEGG: lbr:LVIS_2140 5.5e-25 arsenate reductase; K00537 arsenate reductase; Belongs to the ArsC family.
  
     0.756
EHL99271.1
Hypothetical protein; KEGG: mpu:MYPU_1770 1.2e-24 cysS; cysteinyl-tRNA synthetase (cysteine--tRNA ligase) K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0374 family.
 
    0.727
EHL95584.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.722
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
    0.700
EHL99722.1
Regulatory protein spx; KEGG: lbr:LVIS_2140 1.8e-51 arsenate reductase; K00537 arsenate reductase; Psort location: Cytoplasmic, score: 8.96; Belongs to the ArsC family.
  
     0.683
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.666
EHM01474.1
Hypothetical protein; Belongs to the UPF0342 family.
  
    0.659
EHL99223.1
CamS sex pheromone family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.655
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.