STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95308.1LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 1.3e-18 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
EHL95309.1
Transporter, major facilitator family protein; KEGG: bmd:BMD_0780 0.00013 narK; nitrite extrusion protein K02575; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.859
EHL95305.1
FMN-binding domain protein; KEGG: lpj:JDM1_2783 1.6e-80 fumarate reductase, flavoprotein subunit precursor; K00244 fumarate reductase flavoprotein subunit.
 
  
 0.805
EHL95370.1
Hypothetical protein; KEGG: rcu:RCOM_2110210 0.00076 Multidrug resistance protein mdtM, putative; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.780
EHL95369.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.779
EHL98596.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 2.1e-18 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.756
aroE-2
Putative shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
   
 0.735
EHL95372.1
Flavin reductase; KEGG: lpj:JDM1_2783 2.0e-210 fumarate reductase, flavoprotein subunit precursor; K00244 fumarate reductase flavoprotein subunit.
 
  
 0.734
aroD
3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
 
     0.682
EHM00026.1
Hypothetical protein; KEGG: lpj:JDM1_2785 2.7e-16 aroD; 3-dehydroquinate dehydratase; K03785 3-dehydroquinate dehydratase I; Psort location: Cytoplasmic, score: 8.96.
 
     0.639
EHL95306.1
ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.567
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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