STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL95128.1KEGG: apb:SAR116_0014 3.2e-93 FeS assembly protein SufB K09014. (469 aa)    
Predicted Functional Partners:
EHL95123.1
KEGG: llk:LLKF_1966 2.3e-97 sufC; SUF system FeS cluster assembly protein ATP-dependent transporter SufC K09013; Psort location: Cytoplasmic, score: 9.97.
 
 0.996
EHL99761.1
KEGG: llk:LLKF_1966 7.8e-90 sufC; SUF system FeS cluster assembly protein ATP-dependent transporter SufC K09013; Psort location: Cytoplasmic, score: 9.97.
 
 0.992
EHL95126.1
Aminotransferase, class V; KEGG: lpj:JDM1_1227 1.2e-86 csd1; cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase; Psort location: Cytoplasmic, score: 9.97; overlaps another CDS with the same product name.
 
 0.973
EHL95125.1
Aminotransferase, class V; KEGG: lpl:lp_1470 1.9e-77 csd1; cysteine desulfurase K11717; Psort location: Cytoplasmic, score: 9.97; overlaps another CDS with the same product name.
 
 0.970
EHL95127.1
SUF system FeS assembly protein, NifU family; KEGG: apb:SAR116_0470 0.00013 NifU-like protein involved in Fe-S cluster formation K04488.
 
  
 0.949
EHL95124.1
KEGG: apb:SAR116_0014 3.7e-24 FeS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 8.96.
 
  
0.941
EHL99759.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.884
EHL95129.1
Periplasmic binding protein.
  
    0.816
EHL99760.1
KEGG: apb:SAR116_0014 2.5e-27 FeS assembly protein SufB K09014.
 
  
0.748
EHL99758.1
SUF system FeS assembly protein, NifU family; KEGG: apb:SAR116_0470 1.3e-07 NifU-like protein involved in Fe-S cluster formation K04488.
  
  
 0.745
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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