STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO54779.1Replication protein. (70 aa)    
Predicted Functional Partners:
EHO54778.1
Hypothetical protein.
      0.930
EHO54780.1
Hypothetical protein.
       0.773
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.766
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.764
EHO48600.1
DHHA1 domain protein; KEGG: lrf:LAR_0519 5.3e-107 alanyl-tRNA synthase; K01872 alanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
   
 0.757
EHO48601.1
Hypothetical protein; KEGG: lbr:LVIS_1223 8.2e-07 alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase.
   
 0.757
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.757
EHO53983.1
Tetratricopeptide repeat protein; KEGG: bli:BL05244 0.00094 response regulator aspartate phosphatase; K06359 response regulator aspartate phosphatase A (stage 0 sporulation protein L).
   
 0.753
EHO54020.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
 0.753
EHO50829.1
Hypothetical protein; KEGG: lsl:LSL_1018 1.3e-112 cellulose synthase catalytic subunit K00694; Psort location: CytoplasmicMembrane, score: 9.82.
   
 0.753
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.