STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO54733.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.884
EHO54731.1
Resolvase protein; KEGG: apb:SAR116_1288 6.7e-13 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.727
EHO54732.1
Hypothetical protein; KEGG: dde:Dde_2093 8.6e-05 DNA ligase, NAD-dependent K01972.
       0.675
EHO49785.1
Hypothetical protein; KEGG: lbr:LVIS_1825 3.3e-10 D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
  
     0.660
EHO48122.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.616
EHO50699.1
Hypothetical protein.
  
     0.489
EHO50589.1
Putative membrane protein; KEGG: sna:Snas_0956 0.0018 peptide methionine sulfoxide reductase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.484
EHO54734.1
Hypothetical protein.
       0.476
EHO54736.1
LPXTG-motif protein cell wall anchor domain protein.
  
     0.469
EHO50329.1
KEGG: lbr:LVIS_1883 1.4e-76 N-acetylmuramoyl-L-alanine amidase; K01227 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01447.
   
  
 0.459
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.