STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO54081.1AraC-like ligand binding domain protein. (196 aa)    
Predicted Functional Partners:
EHO54592.1
Hypothetical protein; KEGG: mpe:MYPE6470 1.4e-10 parC; DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A; Psort location: OuterMembrane, score: 9.52.
  
     0.690
EHO54080.1
Transcriptional regulator, AraC family; KEGG: bcz:BCZK2914 0.0056 adaA; methylphosphotriester-DNA alkyltransferase K13530.
       0.594
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.564
EHO49708.1
Hypothetical protein.
 
 
 0.536
EHO53131.1
KEGG: cbb:CLD_3368 7.2e-135 O-glycosyl hydrolase, family protein; K01201 glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
     0.525
EHO52386.1
Hypothetical protein.
  
     0.508
EHO52394.1
KEGG: cbk:CLL_A0691 0.0013 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 8.96; overlaps another CDS with the same product name.
 
 
 0.492
EHO49880.1
KEGG: apb:SAR116_2180 0.00012 transcriptional regulator, ArsR family.
  
    0.492
EHO51846.1
CAAX amino terminal protease family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.457
EHO51234.1
Transcriptional regulator, AraC family; KEGG: ere:EUBREC_2332 5.0e-06 2-isopropylmalate synthase; K01649 2-isopropylmalate synthase; Psort location: Cytoplasmic, score: 8.96.
  
     0.453
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.