STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO53865.1GIY-YIG catalytic domain protein; KEGG: gka:GK2675 4.3e-57 uvrC; excinuclease ABC subunit C K03703; Psort location: Cytoplasmic, score: 9.97. (247 aa)    
Predicted Functional Partners:
EHO53866.1
Hypothetical protein; KEGG: bao:BAMF_2654 5.1e-102 uvrC; excinuclease ABC (subunit C); Psort location: Cytoplasmic, score: 9.97.
     0.994
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
 
 
 0.983
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
 
 
 0.843
EHO49871.1
KEGG: apb:SAR116_0401 1.3e-131 excinuclease ABC, A subunit K03701; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.816
EHO53143.1
KEGG: sax:USA300HOU_0787 6.6e-132 uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.806
EHO46602.1
KEGG: saf:SULAZ_1539 1.5e-141 uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.762
EHO50898.1
Hypothetical protein; KEGG: lbr:LVIS_0516 2.1e-96 transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase); Psort location: Cytoplasmic, score: 9.97.
  
   
 0.713
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
 
    
 0.707
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.682
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
   
 0.651
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.