STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO52284.1Universal bacterial protein YeaZ; KEGG: sgo:SGO_0221 5.5e-41 glycoprotein endopeptidase K01409; Psort location: Cytoplasmic, score: 8.96. (241 aa)    
Predicted Functional Partners:
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.999
EHO54488.1
Hydrolase, P-loop family; KEGG: ckp:ckrop_1741 7.0e-18 alanine racemase K01775; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.992
EHO52283.1
KEGG: lbr:LVIS_0611 2.8e-53 acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.981
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
    0.965
EHO52285.1
KEGG: lbr:LVIS_0609 5.5e-57 acyl-ACP thioesterase; K01071 oleoyl-[acyl-carrier-protein] hydrolase; Psort location: Cytoplasmic, score: 8.96.
       0.868
EHO52288.1
KEGG: lbr:LVIS_0606 9.4e-78 DNA polymerase III subunit delta' K02341; Psort location: Cytoplasmic, score: 9.26.
 
    0.850
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.835
EHO52287.1
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
       0.834
EHO52289.1
Hypothetical protein.
       0.785
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.785
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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