STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO50682.1Helicase protein; KEGG: pic:PICST_88383 1.7e-24 ADD1.2; ATP-dependent DNA helicase K01152; Psort location: Cytoplasmic, score: 8.96. (451 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.987
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.986
EHO50683.1
Phage nucleotide-binding protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.957
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.950
EHO50680.1
Phage/plasmid primase, P4 family domain protein; KEGG: gva:HMPREF0424_0874 9.5e-85 nucleoside triphosphatase, D5 family; Psort location: Cytoplasmic, score: 8.96.
 
     0.939
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
   
 0.901
EHO50144.1
DEAD2 domain protein; KEGG: cno:NT01CX_0936 6.8e-146 DNA repair helicase, truncation, putative; K10844 DNA excision repair protein ERCC-2; Psort location: Cytoplasmic, score: 9.97.
   
 0.901
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.882
EHO53351.1
Hypothetical protein; KEGG: lpl:lp_1021 3.2e-11 rpoB; DNA-directed RNA polymerase subunit beta K03043.
   
  0.879
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.879
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.