STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO50562.1KEGG: sde:Sde_1695 7.2e-103 recombination factor protein RarA K07478; Psort location: Cytoplasmic, score: 9.26. (447 aa)    
Predicted Functional Partners:
EHO50561.1
Macro domain protein; KEGG: noc:Noc_1830 1.8e-44 Appr-1-p processing; Psort location: Cytoplasmic, score: 8.96.
      0.955
EHO54541.1
KEGG: ppe:PEPE_0562 6.3e-230 ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.618
EHO51051.1
KEGG: lrf:LAR_0730 8.0e-104 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.618
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.589
EHO50449.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 
 0.542
EHO50450.1
KEGG: lbr:LVIS_0002 1.5e-18 DNA polymerase sliding clamp subunit; K02338 DNA polymerase III subunit beta.
    
 
 0.542
prmC
protein-(glutamine-N5) methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
  
 0.457
EHO50560.1
KEGG: lrh:LGG_00627 4.1e-52 NUDIX family hydrolase; K03426 NAD+ diphosphatase.
       0.447
EHO48493.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 5.3e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
     
 0.442
EHO48565.1
HAD hydrolase family; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
 
      0.434
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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