STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO48838.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (291 aa)    
Predicted Functional Partners:
nfo
Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
 
     0.715
EHO48837.1
KEGG: ppe:PEPE_1113 2.3e-65 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.630
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.615
hisS
histidine--tRNA ligase; KEGG: lbr:LVIS_0735 1.7e-172 hisS; histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 10.00.
       0.615
EHO51636.1
KEGG: lbr:LVIS_1759 1.1e-99 guaA; GMP synthase K01951; Psort location: Cytoplasmic, score: 9.26; overlaps another CDS with the same product name.
    
  0.543
EHO51637.1
KEGG: ppe:PEPE_0412 4.1e-123 guaA; GMP synthase K01951; Psort location: Cytoplasmic, score: 9.97; overlaps another CDS with the same product name.
    
  0.543
EHO48836.1
ABC-2 type transporter; KEGG: apb:SAR116_0895 9.7e-05 Abc-2; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.522
EHO48835.1
KEGG: ppe:PEPE_1112 7.3e-110 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Psort location: CytoplasmicMembrane, score: 9.82.
       0.459
EHO51105.1
Transcriptional regulator, MarR family.
  
     0.451
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.445
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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