STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO48578.1Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 1.3e-07 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00. (353 aa)    
Predicted Functional Partners:
EHO48579.1
ComG operon protein 1 family protein; KEGG: pen:PSEEN5305 2.0e-34 type II secretion system protein E K02454; Psort location: Cytoplasmic, score: 9.97.
 
 0.999
EHO48576.1
Prepilin-type cleavage/methylation protein; Overlaps another CDS with the same product name.
 
  
 0.986
EHO48577.1
Prepilin-type cleavage/methylation protein; Overlaps another CDS with the same product name.
 
  
 0.984
EHO54015.1
KEGG: apb:SAR116_0501 1.7e-07 possible DNA uptake protein, ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.934
EHO53349.1
Bacterial peptidase A24 protein; KEGG: sga:GALLO_0591 2.9e-28 putative peptidase; K02236 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.898
EHO54013.1
comEA protein; KEGG: hor:Hore_06940 3.1e-08 glycogen/starch synthase, ADP-glucose type K00703; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.808
EHO52272.1
KEGG: bmq:BMQ_5117 1.3e-64 comFA; ComFA competence protein K02240; Psort location: Cytoplasmic, score: 9.97.
   
  
 0.718
EHO46192.1
Hypothetical protein.
  
 
   0.704
EHO52798.1
LysM domain protein; KEGG: bay:RBAM_009680 5.4e-15 lytE; hypothetical protein; Psort location: Extracellular, score: 9.65.
  
 
   0.688
EHO48581.1
DNA-binding regulatory protein, YebC/PmpR family; KEGG: zmo:ZMO0153 2.9e-28 hypothetical protein; K00975 glucose-1-phosphate adenylyltransferase.
 
     0.677
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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