STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiA-2Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (226 aa)    
Predicted Functional Partners:
EHO49421.1
Transketolase; KEGG: lfe:LAF_1721 9.9e-225 transketolase; K00615 transketolase; Psort location: Cytoplasmic, score: 9.26; Belongs to the transketolase family.
   
 0.903
EHO51145.1
KEGG: lbr:LVIS_0960 7.0e-89 pentose-5-phosphate-3-epimerase; K01783 ribulose-phosphate 3-epimerase; Psort location: Cytoplasmic, score: 9.97.
  
 0.900
EHO54266.1
Phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 
 0.892
prs-2
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 
 0.883
EHO49417.1
Orotidine 5'-phosphate decarboxylase/HUMPS family protein; KEGG: ooe:OEOE_0131 9.0e-41 hexulose-6-phosphate synthase K08093; Psort location: Cytoplasmic, score: 8.96.
    
 0.883
EHO54609.1
Putative phosphoglucomutase; KEGG: lbr:LVIS_1907 6.2e-200 phosphomannomutase; K01835 phosphoglucomutase; Psort location: Cytoplasmic, score: 8.96.
     
 0.882
EHO53432.1
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.882
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 
 0.872
EHO54196.1
KEGG: lbr:LVIS_0144 2.3e-106 6-phosphogluconate dehydrogenase-like protein; K00033 6-phosphogluconate dehydrogenase; Psort location: Cytoplasmic, score: 9.26.
    
 0.870
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.
   
 0.866
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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