STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHO45871.1Aspartate racemase; KEGG: lsl:LSL_0018 4.4e-80 racX; aspartate racemase K01779; Psort location: Cytoplasmic, score: 8.96; Belongs to the aspartate/glutamate racemases family. (238 aa)    
Predicted Functional Partners:
EHO45874.1
Asparagine synthase; KEGG: lbr:LVIS_1501 3.0e-278 asparagine synthase (glutamine-hydrolyzing); K01953 asparagine synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 9.97.
 
  
 0.981
EHO45872.1
KEGG: neu:NE1792 1.8e-05 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.955
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of L-lysine to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.
 
   
 0.918
pyrB
KEGG: lpl:lp_2703 1.6e-98 pyrB; aspartate carbamoyltransferase catalytic subunit K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.907
EHO53630.1
KEGG: lpj:JDM1_2272 1.8e-147 aspA; aspartate ammonia-lyase; K01744 aspartate ammonia-lyase; Psort location: Cytoplasmic, score: 9.97.
   
  0.899
EHO49838.1
Asparaginase; KEGG: lbr:LVIS_1836 3.3e-130 L-asparaginase; K01424 L-asparaginase; Psort location: Cytoplasmic, score: 9.97.
    
 0.867
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
   
 
  0.661
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
  
   0.554
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
  0.492
EHO50280.1
Putative fumarate hydratase, class II; KEGG: lbr:LVIS_0714 7.8e-161 fumC; fumarate hydratase K01679; Psort location: Cytoplasmic, score: 9.26.
 
   
  0.490
Your Current Organism:
Lactobacillus kisonensis
NCBI taxonomy Id: 797516
Other names: L. kisonensis F0435, Lactobacillus kisonensis F0435, Lactobacillus kisonensis str. F0435, Lactobacillus kisonensis strain F0435, Lactobacillus sp. oral taxon 424 str. F0435
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