STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFH39905.1PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region. (75 aa)    
Predicted Functional Partners:
AFH39906.1
PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.888
AFH38043.1
Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
   
  
 0.672
AFH39904.1
Hypothetical protein.
       0.660
AFH37944.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
  
 0.615
AFH39147.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.562
AFH39726.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.561
AFH39727.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
  
 0.506
AFH38068.1
Single stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.501
AFH38888.1
Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain.
  
  
 0.456
AFH39779.1
PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
     
 0.454
Your Current Organism:
Thermus thermophilus
NCBI taxonomy Id: 798128
Other names: T. thermophilus JL-18, Thermus thermophilus JL-18, Thermus thermophilus str. JL-18, Thermus thermophilus strain JL-18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.