Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pyrHUridylate kinase; Catalyzes the phosphorylation of UMP to UDP; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
KMK77242.1
Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
KMK77240.1
Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.978
KMK77239.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.958
KMK77243.1
UDP pyrophosphate synthase; Catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.928
upp
Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.915
KMK78230.1
CTP synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.880
KMK77146.1
Orotidine 5'-phosphate decarboxylase; Type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.875
KMK77138.1
Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.854
KMK76596.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.844
KMK76441.1
Nucleoside diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.835
Your Current Organism:
Bacillus pseudalcaliphilus
NCBI taxonomy Id: 79884
Other names: ATCC 700166, B. pseudalcaliphilus, Bacillus pseudalcalophilus, CIP 105304, DSM 8725, LMG 17951, LMG:17951, strain PN-137
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