STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVFBDipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)    
Predicted Functional Partners:
KMK77265.1
Dipicolinate synthase subunit A; Catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
KMK75999.1
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
KMK77004.1
Peptidase S55; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.701
KMK77269.1
Catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.701
KMK76115.1
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
KMK76684.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
KMK76164.1
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
KMK77127.1
Sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
KMK76450.1
Stage IV sporulation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
KMK76159.1
Spore gernimation protein KA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
Your Current Organism:
Bacillus pseudalcaliphilus
NCBI taxonomy Id: 79884
Other names: ATCC 700166, B. pseudalcaliphilus, Bacillus pseudalcalophilus, CIP 105304, DSM 8725, LMG 17951, LMG:17951, strain PN-137
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.