Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMK76839.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (63 aa)    
Predicted Functional Partners:
KMK76840.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
KMK77795.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.543
KMK75376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.492
KMK76841.1
ATP synthase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
KMK76717.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.465
KMK76544.1
Transition state regulator Abh; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.465
KMK74470.1
Transition state regulator Abh; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.465
KMK76923.1
PemK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.447
KMK75188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.447
KMK77599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
Your Current Organism:
Bacillus pseudalcaliphilus
NCBI taxonomy Id: 79884
Other names: ATCC 700166, B. pseudalcaliphilus, Bacillus pseudalcalophilus, CIP 105304, DSM 8725, LMG 17951, LMG:17951, strain PN-137
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