STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK75564.1Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
KMK76617.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.967
KMK75563.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.937
KMK75221.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.928
KMK78074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.906
KMK76954.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.892
KMK77051.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.883
KMK75223.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.883
KMK74394.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.883
KMK78072.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.882
KMK77839.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.882
Your Current Organism:
Bacillus pseudalcaliphilus
NCBI taxonomy Id: 79884
Other names: ATCC 700166, B. pseudalcaliphilus, Bacillus pseudalcalophilus, CIP 105304, DSM 8725, LMG 17951, LMG:17951, strain PN-137
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