STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK74488.1peptidyl-tRNA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)    
Predicted Functional Partners:
KMK77909.1
GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.906
KMK74489.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.835
KMK74487.1
50S ribosomal protein L25; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.806
KMK77848.1
Peptide chain release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.768
KMK74490.1
Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.759
KMK75970.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.750
KMK78256.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.734
KMK77242.1
Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.731
KMK74710.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.668
KMK76519.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.648
Your Current Organism:
Bacillus pseudalcaliphilus
NCBI taxonomy Id: 79884
Other names: ATCC 700166, B. pseudalcaliphilus, Bacillus pseudalcalophilus, CIP 105304, DSM 8725, LMG 17951, LMG:17951, strain PN-137
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.