STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF14RBR-type E3 ubiquitin transferase. (532 aa)    
Predicted Functional Partners:
FAM46A
Protein FAM46A.
      
 0.642
Usp4
Ubiquitin carboxyl-terminal hydrolase 4.
      
 0.633
DYNC1H1
Cytoplasmic dynein 1 heavy chain 1.
      
 0.613
Arih1
RBR-type E3 ubiquitin transferase.
     
0.524
ERF1
Eukaryotic peptide chain release factor subunit 1.
    
 
 0.524
ARIH1
RBR-type E3 ubiquitin transferase.
     
0.524
CSKR_10227s
Uncharacterized protein.
    
 
 0.513
DUS2
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like.
    
 
 0.477
Eif6
Eukaryotic translation initiation factor 6.
      
 0.446
CSKR_7198s
Uncharacterized protein.
    
 
 0.431
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.