STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MON1AVacuolar fusion protein MON1-like protein A. (488 aa)    
Predicted Functional Partners:
CCZ1
Vacuolar fusion protein CCZ1-like protein.
    
 0.997
Vps41
Vacuolar protein sorting-associated protein 41-like protein.
    
 
 0.966
Rab7a
Ras-related protein Rab-7a.
    
 0.953
VPS11
Vacuolar protein sorting-associated protein 11-like protein.
    
 
 0.810
Vps39
Vam6/Vps39-like protein.
   
 
 0.805
RAB10
Ras-related protein Rab-10.
    
 0.775
RABGEF1
Rab5 GDP/GTP exchange factor.
    
 
 0.751
Rabgef1
Rab5 GDP/GTP exchange factor.
    
 
 0.751
Gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.737
GDI1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.737
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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