STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ShabPotassium voltage-gated channel protein Shab; Belongs to the potassium channel family. (644 aa)    
Predicted Functional Partners:
RPL29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.830
Rpl31
Large subunit ribosomal protein L31e.
   
 0.830
mrpl22
39S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 0.829
RpL30
60S ribosomal protein L30.
   
 0.828
rpl35a
60S ribosomal protein L35a.
   
 0.828
RpL32
60S ribosomal protein L32.
   
 0.827
CSKR_5048s
60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.820
rpl5-a
60S ribosomal protein L5-A.
   
 0.818
rpl-41
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.815
RPL13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.812
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.