STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pol-3LINE-1 retrotransposable element ORF2 protein. (1728 aa)    
Predicted Functional Partners:
CTTNBP2
Cortactin-binding protein 2.
    
 0.648
BARD1
BRCA1-associated RING domain protein 1.
    
0.648
RpL40
Large subunit ribosomal protein L40e.
    
  0.566
GGCT
Gamma-glutamylcyclotransferase.
    
  0.563
Rpn11
26S proteasome non-ATPase regulatory subunit 14.
    
  0.534
MRE11A
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.509
RPL13A
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.485
MRPL2
39S ribosomal protein L2 mitochondrial.
   
 
 0.450
CSKR_1682s
Uncharacterized protein.
   
 
 0.441
rpl8
60S ribosomal protein L8.
   
 
 0.441
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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